Publication:
The microbiome as a human organ

Loading...
Thumbnail Image
Full text at PDC
Publication Date
2012
Advisors (or tutors)
Editors
Journal Title
Journal ISSN
Volume Title
Publisher
European Society of Clinical Microbiology and Infectious Diseases
Citations
Google Scholar
Research Projects
Organizational Units
Journal Issue
Abstract
The human organism is a complex structure composed of cells belonging to all three domains of life on Earth, Eukarya, Bacteria and Archaea, as well as their viruses. Bacterial cells of more than a thousand taxonomic units are condensed in a particular functional collective domain, the intestinal microbiome. The microbiome constitutes the last human organ under active research. Like other organs, and despite its intrinsic complexity, the microbiome is readily inherited, in a process probably involving ‘small world’ power law dynamics of construction in newborns. Like any other organ, the microbiome has physiology and pathology, and the individual (and collective?) health might be damaged when its collective population structure is altered. The diagnostic of microbiomic diseases involves metagenomic studies. The therapeutics of microbiome-induced pathology include microbiota transplantation, a technique increasingly available.
Description
Keywords
Citation
1. Angelakis E, Armougom F, Million M, Raoult D. The relationship between gut microbiota and weight gain in humans. Future Microbiol 2012; 7: 91–109. 2. Gonzalez A, Stombaugh J, Lozupone C et al. The mind–body–microbial continuum. Dialogues Clin Neurosci 2011; 13: 55–62. 3. Dominguez-Bello MG, Costello EK, Contreras M et al. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A 2010; 107: 11971–1197. 4 4. Reid G, Younes JA, Van der Mei C et al. Microbiota restoration: natural and supplemented recovery of human microbial communities. Nature Rev Microbiol 2010; 9: 27–38. 5. Robinson CJ, Bohannan BJM, Young VB. From structure to function: the ecology of host-associated microbial communities. Microb Mol Biol Rev 2010; 74: 453–476. 6. Moya A, Gil R, Latorre A. The evolutionary history of symbiotic associations among bacteria and their animal hosts: a model. Clin Microb Infect 2009; 15 (suppl 1): 11–13. 7. Caporaso JG, Lauber CL, Costello EK et al. Moving pictures of the human microbiome. Genome Biol 2011; 12: R50. 8. Bogaert D et al. Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PLoS ONE 2011; 6: e17035. 5 9. Smillie CS, Smith MB, Friedman J et al. Ecology drives a global network of gene exchange connecting the microbiome. Nature 2011; 480: 241–244. 10. Jones BV, Sun F, Marchesi JR. Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome. BMC Genomics 2010; 11: 46. 11. Baquero F, Coque TM, de la Cruz F. Ecology and evolution as targets: the need of novel eco-evo drugs to fight against antibiotic resistance. Antimicrob Agents Chemother 2011; 55: 3649–3660. 12. Quigley EM. Prebiotics and probiotics: modifying and mining the microbiota. Pharmacol Res 2010; 61: 213–218. 13. Gough E, Shaikh H, Manges AR. Systematic review of intestinal microbiota transplantation (fecal bacteriotherapy) for recurrent Clostridium difficile infection. Clin Infect Dis 2011; 53: 994–1002. 14. Borody TJ, Khoruts A. Faecal microbiota transplantation and emerging applications. Nat Rev Gastroent Hepatol 2012; 9: 88–96. 15. Brandt LJ, Aroniadis OC, Mellow M et al. Long-term follow-up of colonoscopic fecal microbiota transplant for recurrent Clostridium difficile infection. Am J Gastroenterol 2012; 25: 45–89. 16. Khoruts A, Sadowski MJ. Therapeutic transplantation of the distal gut microbiota. Mucosal Immun 2011; 4: 4–7. 17. Khoruts A, Dicksved J, Jansson JK, Sadowsky MJ. Changes in the composition of the human fecal microbiome after bacteriotherapy for recurrent Clostridium difficile-associated diarrhea. J Clin Gastroenterol 2010; 44: 354–360. 18. Hamilton MJ, Weingarden AR, Sadowsky MJ, Khoruts A. Standardized frozen preparation for transplantation of fecal microbiota for recurrent Clostridium difficile infection. Am J Gastroenterol 2012; 107: 761–767. 19. Pang X, Hua X, Yang Q et al. Inter-species transplantation of gut microbiota from human to pigs. ISME J 2007; 1: 156–162. 20. Willing BP, Vacharaksa A, Croxen M, Thanachayanont T, Finlay BB. Altering host resistance to infections through microbial transplantation. PLoS One 2011; 6: e26988. 21. Shanahan F. Gut microbes: from bugs to drugs. Am J Gastroenterol 2010; 105: 275–279.
Collections