The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science

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Tatout, Christophe and Mougeot, Guillaume and Parry, Geraint and Baroux, Célia and Pradillo Orellana, Mónica and Evans, David (2022) The INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) Academy: a community resource for plant science. Journal of Experimental Botany, 73 (7). pp. 1926-1933. ISSN 0022-0957 Electronic: 1460-2431

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Official URL: https://doi.org/10.1093/jxb/erac005



Abstract

This Community Resource paper introduces the range of materials developed by the INDEPTH (Impact of Nuclear Domains on Gene Expression and Plant Traits) COST Action made available through the INDEPTH Academy. Recent rapid growth in understanding of the significance of epigenetic controls in plant and crop science has led to a need for shared, high-quality resources, standardization of protocols, and repositories for open access data. The INDEPTH Academy provides a range of masterclass tutorials, standardized protocols, and teaching webinars, together with a rapidly developing repository to support imaging and spatial analysis of the nucleus and deep learning for automated analysis. These resources were developed partly as a response to the COVID-19 pandemic, but also driven by needs and opportunities identified by the INDEPTH community of ~200 researchers in 80 laboratories from 32 countries. This community report outlines the resources produced and how they will be extended beyond the INDEPTH project, but also aims to encourage the wider community to engage with epigenetics and nuclear structure by accessing these resources.


Item Type:Article
Uncontrolled Keywords:COST Action; Image repository; Plants; protocols; Tutorials; Webinars
Subjects:Medical sciences > Biology > Botany
Medical sciences > Biology > Genetics
ID Code:74018
Deposited On:27 Jul 2022 08:51
Last Modified:03 Aug 2022 10:45

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